PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_15980V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1209aa    MW: 130935 Da    PI: 9.8685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_15980V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07620640425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        + C +far G Ck+G+ C+FaH
  Pp3c4_15980V3.2.p 620 PVCLDFAR-GRCKRGNVCRFAH 640
                        78******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099051.13E-1292166IPR000061SWAP/Surp
SMARTSM006481.6E-4112171IPR000061SWAP/Surp
PROSITE profilePS5012810.888114162IPR000061SWAP/Surp
PfamPF018052.0E-7115148IPR000061SWAP/Surp
PROSITE profilePS5010313.882616643IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4616642IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4619640IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4621642IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1209 aa     Download sequence    Send to blast
MLRPGLGLVS LQGTAQSSSP GPSRTLVSNP SQSGPPFAMH GRGGSPGPFP EHLQHFSGQY  60
PGYPGPQRGA GPPPSHHAGD APTDRMPSST PIVAEWRAVE EPPLAPQDSD MLKNIDILSG  120
FVVKNGPQFE DMARHKQADD PKFAFLFGGV PGSEAAIGKA YYEWKKRSLI AAANLPADPF  180
VQPRSNNEPE VFPPSPLPDT PHSPHGSDMD MEDDFEKPSQ STEIRCEQVQ EPVSSLPAKK  240
EPVLSSKMET NAKPQGAQNP RVPIPLTVTY QSSSTTASVA PPQVSSSVGV SSRPQSNSAR  300
DDLPKRKDTR RRTGFDRSCM EDVTPVSSPP VQAKSQELEA AGQGHGSRSS SRVSRWGPQD  360
RSLGYDSSRK VSPSVDASNK NSDQGSEIPH VNVVDRSGVE DRLEAVTPPR DNDSEHKREG  420
DKNSQLEDAS TKSEDRKTTE YSTMPDRDQP KDSSLRLENR KMRVSDDRKS RDSTTLEESR  480
IQDEPPRASK QQKGVSELDP GNKGPTVDEF GRFIRPGGSE SDAEDSHYDR KRRHASRSRS  540
RSPPDNRRRR RSRSSSPRRH SRRSHSRSRS PRRRRSWSKS PGRETRRGGD SARGRERGNQ  600
DRNDRGGRRG GRGDRGGGPP VCLDFARGRC KRGNVCRFAH TESTNDPSTE GRYDRGGGRG  660
GRGSRLDDRQ ESHDSGRSHG GGSSRSGWNE QNPRGRRGWE PTDQKEKCYN KELRKSMEDF  720
AREQPETSPV SDYGDEAKLS ERRNNERSKD RSYQDANATN SVESGSFAVE THAPFSGGPD  780
GLPSLAQLPP PPPLPHHSQG FSSSSVPPQQ SYMGYLPSQS GFNLPPPPPP PLMNQSENLS  840
MPQPSYGNSG APQPALPPQV SSGIANLPMR PAVSTGPSQV GGQSMAPTSR SSYTWQSTPT  900
AAPASIAYNG QSIQASGAQS NYGLPPPPPP PSAAYTSTLS RYQLPQQSQA AQPGGQFNVM  960
AMDRPELGPP GARDAGVKGG QDNTAVVSRP NMGQWKSSGG NGTSTHMDDV VLESVSPGLP  1020
GHHRMENLSP GPGPGLVMES VSPALVAYAS NTSTVPTQGT GASTFGSSQQ DNPNVAGLES  1080
VSPAPEEPQN WSPGGGGDTN KDDKRGDKRD RRDKDHKSDK DHKVKGMTFL RTAVAEHVKE  1140
TLKPTWREGQ MSKEAFKTIA KKAVDKVLSA IKPHQVPTTE EKVEAYMMIA RPKISKLVQG  1200
YVDKYVKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1530550KRRHASRSRSRSPPDNRRRRR
2609617GGRGDRGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.165930.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001754459.10.0predicted protein
TrEMBLA9RJZ20.0A9RJZ2_PHYPA; Predicted protein
STRINGPP1S13_332V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-19C3H family protein